| A. Cancer Genomics |
| A01 | TREM2+ Macrophages Promote Hepatocellular Carcinoma Progression via the MMP12-PLAUR Axis | JEON SAE BOM | | 2025-10-15 (WED) |
| A02 | Distinct Genomic Characteristics and Ethnic Implications of Homologous Recombination Deficiency in High-Grade Serous Carcinoma | Ju-Won Kim | | 2025-10-15 (WED) |
| A03 | Multiomics profiling of plasma and buffy coat unveils predictive biomarkers for immunotherapy responses in patients with hepatocellular carcinoma | Jiwon Hong | | 2025-10-15 (WED) |
| A04 | Polycomb-targeted TF genes remain active despite promoter hypermethylation in colorectal cancer | Minkyeong Kwon | | 2025-10-15 (WED) |
| A05 | Learning Mutational Contexts Beyond Fixed k-mers | Seungho Oh | | 2025-10-15 (WED) |
| A06 | Aberrant nuclear speckle-genome interplay facilitates oncogenic chromosomal translocations | Jaegeon Joo | | 2025-10-15 (WED) |
| B. Computational Drug Discovery |
| B01 | De novo design of albumin-binding peptides with non-canonical amino acids | Lee Dong Myeong | | 2025-10-15 (WED) |
| B02 | Genotype-to-Drug Diffusion for Tailored Anti-cancer Hit-like Small Molecules | Hyunho Kim | | 2025-10-15 (WED) |
| B03 | Substructure-driven Junction-Tree for Interpretability in ADMET Tasks | Myungjin Lee | | 2025-10-15 (WED) |
| B04 | Advanced Computational Drug Repositioning with Attention-guided Random Walks on Refined Heterogeneous Network | Jong-Hoon Park | | 2025-10-15 (WED) |
| B05 | A Hybrid Convolution-Transformer Model for Drug-ATC Prediction Using Multiple Similarity Features | Gwang-Hyeon Yun | | 2025-10-15 (WED) |
| B06 | BayesPPII: Interpretable and Reliable Inhibitor Prediction with Cross-Attention and Bayesian Neural Network | Dongok Nam | | 2025-10-15 (WED) |
| B07 | DiffDesign – An SE(3)-Equivariant Diffusion Model for Molecule Linker Generation | Herim Han | | 2025-10-15 (WED) |
| B08 | LLM-Integrated Representative Path Selection for Context-Aware Drug Repurposing on Biomedical Knowledge Graphs | Haerin Song | | 2025-10-15 (WED) |
| B09 | SubDyve: Subgraph-Driven Dynamic Propagation for Virtual Screening Enhancement Controlling False Positive | Jungseob Yi | | 2025-10-15 (WED) |
| B10 | MMDIMoE: A Mixture-of-Experts Framework for Multimodal Drug–Drug Interaction Prediction | yelin park | | 2025-10-15 (WED) |
| B11 | DeepRNA-DTI: A Deep Learning Approach for RNA-Compound Interaction Prediction with Binding Site Interpretability | Haelee Bae | | 2025-10-15 (WED) |
| B12 | Reconstructing gene expression effects for chemical perturbation with biologically informed generative model | Jiyoon Park | | 2025-10-15 (WED) |
| B13 | Leveraging chemical structural knowledge and in vitro toxicity information for enhancing multi-task in vivo toxicity prediction | Minsu Park | | 2025-10-15 (WED) |
| B14 | A sequence-based protein-ligand binding residue prediction model for virtual screening. | Kim Mingyeol | | 2025-10-15 (WED) |
| B15 | Multi-factor mRNA coding sequence optimization for enhanced RNA stability and protein expression | Sohyeon Ju | | 2025-10-15 (WED) |
| B16 | Density-Distilled Neural Network Potentials for Capturing Charge Redistribution in Amino Acid–Ligand Interactions | Jiwon Jeon | | 2025-10-15 (WED) |
| B17 | A Hybrid ML-QSAR and Structure-Based Pipeline for Virtual Discovery of Potential GSK-3β Inhibitors | Juyoung Cho | | 2025-10-15 (WED) |
| B18 | Synergistic Approach of Consensus and Flexible Docking for Accurate Binding Pose Estimation | Bumjoon Choi | | 2025-10-15 (WED) |
| B19 | Improving Protein-Ligand Interaction Prediction using Electron-Aware Embeddings | Donghyeon Kim | | 2025-10-15 (WED) |
| C. Genomic Variation & Disease |
| C01 | Transposable elements and Chk2 mutation drive heritable germline variation in Drosophila | Yujeong Lee | | 2025-10-15 (WED) |
| C02 | Transcriptome- and Proteome-wide Association Studies to Identify Potential Causal Mechanisms of Asthma | Jaeseung Song | | 2025-10-15 (WED) |
| C03 | Genetic Architecture of Alzheimer's Disease in the Korean Population Revealed by a Large-Scale GWAS | Chanbyeol Kim | | 2025-10-15 (WED) |
| C04 | Targeted next-generation sequencing approach for simultaneous Mycobacterium species identification and detection of resistance-associated mutations in Mycobacterium tuberculosis | Jeong-Ih Shin | | 2025-10-15 (WED) |
| C05 | Variety-Specific Rice Samples and Their Influence on False Positives in Variant Calling | Sunhee Kim, Dongju Lee, and Chang-Yong Lee | | 2025-10-15 (WED) |
| C06 | Uncover Genetic Influences on Aging-Related Factors Using SV-based Genome-wide Association Studies | Dongjin Oh | | 2025-10-15 (WED) |
| C07 | GEM-Finder: dissecting GWAS variants via long-range interacting cis-regulatory elements with differentiation-specific genes | Gyeongsik Park | | 2025-10-15 (WED) |
| C08 | Integrated assembly- and alignment-based long-read sequencing identifies novel de novo variants in Korean ASD families | Hyeji Lee | | 2025-10-15 (WED) |
| D. Data Integration, Harmonization, and Ontology |
| D01 | Interactive Visualization and Harmonization of Multicenter Brain Image Cohorts | Byungsoo Park | | 2025-10-15 (WED) |
| D02 | KArray: A public archive for microarray-based functional genomics data | Jiin choi | | 2025-10-15 (WED) |
| D03 | From Biomedical Text to Knowledge Graph: A Unified Framework for Entity Recognition, Relation Extraction, and Normalization | GYUJIN SON | | 2025-10-15 (WED) |
| E. Haplotypes & Population Genomics |
| E01 | Genomic insights into early and mid-late maturity of Korean Oryza sativa cultivars | Yejin Lee | | 2025-10-15 (WED) |
| E02 | FAULDS: A Bayesian MCMC Framework for Likelihood-Based Decomposition of DNA Mixtures | Taehyeon Kim | | 2025-10-15 (WED) |
| F. Imaging Genomics & Radiation Genomics |
| F01 | High-Echogenicity Regions Harbor Greater Genomic Complexity: A Radiogenomic Guide for Targeted Breast Biopsy | Chaejoo Kim | | 2025-10-15 (WED) |
| G. Imaging Informatics |
| G01 | Leveraging Self-Similarity to Enhance Mass Spectrometry Imaging-based Bio-molecular Mapping | JaeMin Kim | | 2025-10-15 (WED) |
| G02 | Automated Multiple ROI Labeling for Intracellular Dynamics-Resolved Scattering (IDRS) in Single Bacterial Analysis | Sujin Kim | | 2025-10-15 (WED) |
| H. Public Health & Population Health Informatic |
| H01 | Population-Specific Genetic Risk Stratification Using the Korea Biobank Array v2.0 in Koreans | Inhae Jeong | | 2025-10-15 (WED) |
| H02 | DILI-Assist: A Web-Based Decision Support Platform for Drug-Induced Liver Injury Assessment | So-Hui Kim | | 2025-10-15 (WED) |
| I. Large language model (LLM) for healthcare applications |
| I01 | scTAG-DB: Tissue-specific marker gene database approach for LLM-based cell type annotation in single-cell analysis | Jiyeong Shin | | 2025-10-15 (WED) |
| I02 | HLAgent: Scalable AI Agent for HLA Region Analysis with a natural language interface | Junggeon Han | | 2025-10-15 (WED) |
| I03 | Next-generation precision oncology: OpenAI API for biomarker extraction and whole-genome sequencing-guided therapy | Mohammad Naushad Alam | | 2025-10-15 (WED) |
| J. Phylogenetics |
| J01 | Novel Random forest-based identification of a single chloroplast DNA barcode gene for Lemnoideae Classification | Park Halim | | 2025-10-15 (WED) |
| J02 | Phylogeographic insights of maize (Zea mays L.) dispersal through landrace plastome analysis | Park Jinseong | | 2025-10-15 (WED) |
| K. Sequence Analysis |
| K01 | Whole-Genome Assembly and Analysis of a Chili Pepper Cultivar (Capsicum sp.) in the Philippines | Marianne Yssabelle Sabdao Lunas | | 2025-10-15 (WED) |
| K02 | GPU-accelerated homology search with MMseqs2 | Milot Mirdita | | 2025-10-15 (WED) |
| K03 | Nanopore Direct Sequencing of RNA-DNA Hybrid Molecules | Sojeong Lee | | 2025-10-15 (WED) |
| K04 | ParaEM : Sequence-based paratope predictor using Expectation-Maximization with CDR prior | KIM TAEGYU | | 2025-10-15 (WED) |
| K05 | Evolutionary Insights from the Giant Genome of Cuscuta japonica (≈40 Gb): Unraveling the Genetic Basis of Extreme Genome Expansion in a Parasitic Plant | Kang Yang Jae | | 2025-10-15 (WED) |
| K06 | Plasma Cell-free Transcriptome Enables Early Detection and Stage-Stratification of Aggressive Solid Tumors | Jimin Seo | | 2025-10-15 (WED) |
| L. Metagenomics & Algorithms for Microbiomes |
| L01 | Metagenome-assembled genomes enhance bacterial read decontamination and variant calling in oral samples | Zunu An | | 2025-10-15 (WED) |
| L02 | Monthly-resolved marine metagenome-assembled genomes (MAGs) from the East Sea (South Korea): temporal dynamics and functional potential | Amanzhanova Amina | | 2025-10-15 (WED) |
| L03 | Exclusive cataloging of near-complete genomes unveils novel functional insights into the human gut microbiome | Junyeong Ma | | 2025-10-15 (WED) |
| L04 | Mouse reference gut virome catalog that enable comprehensive understanding of mouse gut virosphere | Han-June Kim | | 2025-10-15 (WED) |
| L05 | MycobiomeDB: Body-site-stratified fungal genome database enhancing human mycobiome analysis | Sehun Ahn | | 2025-10-15 (WED) |
| L06 | Microbial Maturity Index Reveals Delayed Gut Microbiome Development and Disease-Associated Features in Pediatric Inflammatory Bowel Disease | WOOYEONG PARK | | 2025-10-15 (WED) |
| L07 | Machine Learning and Graph-based Approaches for Microbiome Biomarker Discovery in Inflammatory Bowel Disease | JaeYoung Jang | | 2025-10-15 (WED) |
| L08 | Development of machine learning model for prediction in virulence level of pathogenic Escherichia coli | Yoojung Hwang | | 2025-10-15 (WED) |
| L09 | Towards Precision Immunotherapy: A Multimodal AI Approach Combining Microbiome Taxonomy and Genomic Data for Drug Response Prediction | Suyeon Lee | | 2025-10-15 (WED) |
| L10 | Monthly-resolved marine metagenome-assembled genomes (MAGs) from the East Sea (South Korea): temporal dynamics and functional potential | Amanzhanova Amina | | 2025-10-15 (WED) |
| L11 | Cold Atmospheric Plasma Enriches Beneficial Soil Microbes and Enhances Microbial Resilience | Seona Park | | 2025-10-15 (WED) |
| L12 | DRGM: A Comprehensive Reference Catalog of the Dog Gut Microbiome | Yerin Kim | | 2025-10-15 (WED) |
| L13 | Metagenomic Meta-Analysis of the Human Gut Microbiome in Sarcopenia | Jayasinghage Nirmani Chathurangika Jayasinghe | | 2025-10-15 (WED) |
| L14 | Expanding phylogenetic and clinical insights through a comprehensive genome catalog of the human oral microbiome | Jun Hyung Cha | | 2025-10-15 (WED) |
| L15 | Practical guidance for metagenomic binning derived from comprehensive benchmarking | Jungyeon Kim | | 2025-10-15 (WED) |
| L16 | Oral Microbiome Signatures Predict Responsiveness to Adalimumab in Patients with Rheumatoid Arthritis | Sebin Lim | | 2025-10-15 (WED) |
| L17 | From subgingival to saliva: microbial signatures and differential genes reflect changes according to periodontal disease severity | Erin Kim | | 2025-10-15 (WED) |
| M. etc |
| M01 | ArchiveChat: AI-based platform for biological knowledge mining to enhance accessibility and reusability in the exploration of NGS data | Joo-Seok Park | | 2025-10-15 (WED) |
| M02 | Visualization and Implementation of a Bioinformatics Analysis Workflow Management System Using ComfyUI | Dong Joon Yun, Tae Yeong Park | | 2025-10-15 (WED) |
| M03 | Untargeted LC–MS Metabolites across Developmental Stages of Daehwangjam (Bombyx mori) Larvae | Kang Hae ju | | 2025-10-15 (WED) |
| M04 | Information Strategy Plan (ISP) to Establish a Synergy Platform for Integrated Bio-data Analysis and Utilization | Chan-Seok Jeong | | 2025-10-15 (WED) |
| M05 | Differential variability and consensus clustering of genes in spatial transcriptomics | Kim Ju Hyung | | 2025-10-15 (WED) |
| M06 | Accelerating whole-genome analysis: benchmarking GPU- and CPU-based variant calling pipelines | Hye-Yeong Jo | | 2025-10-15 (WED) |
| M07 | RiceDBreeder: Integration and Utilization of GWAS and Korean Rice Phenotype, Pedigree, and Resequencing Data | Dong U WOO | | 2025-10-15 (WED) |
| M08 | Investigation into the regulatory mechanisms of the SARS-CoV-2 translatome | HEE RYUNG CHANG | | 2025-10-15 (WED) |
| M09 | Web interface for breeding design based on phenotype-mapped pedigree information in soybean cultivars | Mingyun Jeong | | 2025-10-15 (WED) |
| M10 | Protein folding stability estimation with explicit consideration of unfolded states | Heechan Lee | | 2025-10-15 (WED) |
| M11 | Transcriptomic Profiling Reveals Marein-Mediated Modulation of Inflammatory Pathways in Doxorubicin-Induced Cardiotoxicity | Ji-Hye Song | | 2025-10-15 (WED) |
| M12 | Genomic Language Model Fine-tuning for Rice Phenotype-Genotype Interpretation | Dasol Kim | | 2025-10-15 (WED) |
| M13 | Exploring the Anti-adipogenic Role of YAP/TAZ at the Chromatin Level | Taejun Seol | | 2025-10-15 (WED) |
| N. ML and AI in Medicine and Healthcare |
| N01 | Machine learning on RNA-seq enables early detection of Alzheimer’s Disease | Hyun Woo Park | | 2025-10-16 (THU) |
| N02 | TDEP: Target-perturbed Differential Expression Profiles for Interpretable Drug–Target Interaction Prediction | Jieun Sung | | 2025-10-16 (THU) |
| N03 | Classifying Dementia Risk in Mild Cognitive Impairment Using SNP-Based Machine Learning with Longitudinal Validation | Myeongji Cho | | 2025-10-16 (THU) |
| N04 | A Framework for Pathway-Based Dimension Reduction for Drug Response Prediction at Single-Cell Resolution | Sungkyung Lee | | 2025-10-16 (THU) |
| N05 | Patient Phenotype Prediction from Single-cell RNA-seq Data through Annotation-free Multiple Instance Learning | Janghyun Noh | | 2025-10-16 (THU) |
| N06 | scFNCCL: Dual Contrastive Learning with False-negative correction at Cell level for single-cell RNA sequence Clustering | GunHo Choi | | 2025-10-16 (THU) |
| N07 | scDECA: Intergrating Gene-Cell interactions with Global Priors and Local Structures in Single-Cell Transcriptomics. | Myeongbin Oh | | 2025-10-16 (THU) |
| N08 | Wearable-Derived Sleep Signatures as Digital Biomarkers of Cognitive Decline in Alzheimer’s Disease | Hyeonseul Park | | 2025-10-16 (THU) |
| N09 | Interpretable Molecular Modeling via Functional Group Tokenization | Gina Ryu | | 2025-10-16 (THU) |
| N10 | AI-Driven Transcriptome-based Immune Phenotyping for Predicting Immunotherapy Response in Lung Cancer | Ki Wook Lee | | 2025-10-16 (THU) |
| N11 | PatchMoE-GC: Improving Gastric Tumour Microenvironment Classification with a Meta-Expert Routing Head | Ahn Hyogyu | | 2025-10-16 (THU) |
| N12 | Aligning Molecules and Fragments in a Shared Embedding Space for RL-Based Molecule Generation | Youngkuk Kim | | 2025-10-16 (THU) |
| N13 | DD-PRiSM: a deep learning framework for decomposition and prediction of synergistic drug combinations | IlJung Jin | | 2025-10-16 (THU) |
| N14 | Hierarchical molecular representation learning with multi-level vector quantization for toxicity prediction | Yewon Shin | | 2025-10-16 (THU) |
| N15 | Generating Drug-Induced Gene Expression Profiles through Continuous Dose-Response Curve Modeling | Schmuhalek Martin | | 2025-10-16 (THU) |
| N16 | Development of an AI Model for PROTAC Drug Activity Prediction | Seokhun Yeon | | 2025-10-16 (THU) |
| N17 | Comprehensive evaluation of current network pharmacology for herbal medicine focusing on identifying mechanisms and therapeutic effects | Won-Yung Lee | | 2025-10-16 (THU) |
| N18 | DuET: A Unified Deep Learning Framework for Predicting mRNA Translation Efficiency Across Human Cell Types | Sungho Lee | | 2025-10-16 (THU) |
| N19 | Machine learning-based image classification and video tracking reveal the correlation between sperm morphology and motility | Seok Hwan Yoon | | 2025-10-16 (THU) |
| N20 | Spatial–Spectral Integrative 3D Convolutional Neural Network for MSI-Based Cancer Diagnosis | LEE SUEUN | | 2025-10-16 (THU) |
| N21 | GDAMP: Graph Neural Network for Antimicrobial Peptide Discovery with Enhanced Domain Sequence-level Interpretability | Hyeon Jun Yoon | | 2025-10-16 (THU) |
| N22 | Benchmarking Diagnostic Performance of Genomic Language Model | Woojong Sim | | 2025-10-16 (THU) |
| N23 | Reproducible Benchmarking of Molecular Representations and Fusion Strategy for Molecular Property Prediction | Minyoung Kim | | 2025-10-16 (THU) |
| N24 | A MediaPipe-based Markerless Gait Analysis System: Multi-level Validation and Feasibility for Pathological Gait Detection | Sung Hoon Choi | | 2025-10-16 (THU) |
| N25 | AI-Driven Framework Modeling Perturbation in Brain Organoids Reveals Candidate Genes for Autism | Koh In Gyeong | | 2025-10-16 (THU) |
| O. Omics Data Integration & Analysis |
| O01 | Computational Pathology Predicts Immunotherapy Response and Maps Spatial Biomarkers in Gastric Cancer | Myung-Giun Noh | | 2025-10-16 (THU) |
| O02 | Predicting Nottingham grade in breast cancer digital pathology using a foundation model | Myung-Giun Noh | | 2025-10-16 (THU) |
| O03 | Bisphenol A alters energy metabolism and promotes a cancer-like transcriptomic state in non-cancerous breast cell lines | Mai Quynh Vu | | 2025-10-16 (THU) |
| O04 | Predicting upstream ligands from gene expression at the single-cell level with PULSO | Hyunbeen Jang | | 2025-10-16 (THU) |
| O05 | Multi-Omics Analysis Highlights The Role of TREM2+ Macrophages in Tumor Progression in Hepatocellular Carcinoma | Aki Uesugi | | 2025-10-16 (THU) |
| O06 | Molecular Responses of Senna tora to Drought Stress: A Transcriptome Perspective | Yoram Choi | | 2025-10-16 (THU) |
| O07 | LAMA2 downregulation via the circRNA–hsa-miR-224 axis facilitates immune evasion and metastasis in non-small cell lung cancer | JIHYE YANG | | 2025-10-16 (THU) |
| O08 | A redesigned probabilistic Transformer for cascading multi-omics integration | Wonjin Yang | | 2025-10-16 (THU) |
| O09 | Integrating Generative Adversarial Networks and Cell-Cell Communications in Axonal Injury | Sangmin Park | | 2025-10-16 (THU) |
| O10 | MolCube-Explorer: An Integrated Platform for Lung Disease Biomarker Discovery | Sungyeon Kim | | 2025-10-16 (THU) |
| O11 | Integrative Multi-Modal and Multi-Omics Analysis Reveals APOE–SDC2 Signaling and Macrophage Polarization as Key Drivers of Chronic Fibrosis in Kidney Xenografts | Gaeun Byeon | | 2025-10-16 (THU) |
| O12 | Spatial transcriptomics provide additional insights into the tumor microenvironment and prognosis of high grade serous cancer | Donghyeon Kim | | 2025-10-16 (THU) |
| O13 | privateST: A Privacy-Preserving Framework for Spatial Transcriptomics Prediction from Histopathology Images Using Homomorphic Encryption | Hakin Kim | | 2025-10-16 (THU) |
| O14 | Transcriptomic profiling reveals distinct mitochondrial and metabolic pathway alterations induced by PFOA in A549 and HepG2 cells | Eo Jin Kim | | 2025-10-16 (THU) |
| O15 | Bioinformatics Approaches Reveal the Cellular Composition and Pathogenesis of Rare Primary Brain Sarcomas | LEE SORA | | 2025-10-16 (THU) |
| O16 | Spatially-resolved gene expression patterns in Alzheimer’s disease brain | Seyoung Jin | | 2025-10-16 (THU) |
| O17 | Pan-cancer analysis of tumor microenvironmental interactions using large-scale scRNAseq and Visium data | Jaewoo Mo | | 2025-10-16 (THU) |
| O18 | Molecular Convergence and Divergence in Osteoarthritis: A Cross-Cohort 12-Gene OA Common Signature and Contrasting Molecular Programs | Hojun Kim | | 2025-10-16 (THU) |
| O19 | Transcriptome-Guided Framework for Overcoming Radioresistance in HNSCC: THBS1-Centered Targeting to Repurposing | Minji An | | 2025-10-16 (THU) |
| O20 | Deep learning-based modeling of 3D genome dynamics | Kyukwang Kim | | 2025-10-16 (THU) |
| P. Protein / RNA Analysis, Structure, and Dynamics |
| P01 | Design of RIPK1 Peptide Inhibitors Using Deep Learning Algorithms | Eunjeong Han | | 2025-10-16 (THU) |
| P02 | Deep-learning Based Design of Peptide Binders Targeting Pan-KRAS Variants | Jaeho Ji | | 2025-10-16 (THU) |
| P03 | AI-Guided Design of Selective Cyclic Peptide Inhibitors Against AXL Kinase for Cancer Therapy | Lee Hae Jin | | 2025-10-16 (THU) |
| P04 | CIPHER introduces translational clarity as a novel metric to identify actively translating open reading frames | Dong Jun Min | | 2025-10-16 (THU) |
| P05 | Mechanistic insights into interactions between ionizable lipid-containing lipid nanoparticles and the endosomal membrane | Yeon Ju Go | | 2025-10-16 (THU) |
| P06 | Characterization of defense immune protein for Feline Infectious Peritonitis Virus (FIPV) | Jeon Juhyeong | | 2025-10-16 (THU) |
| P07 | Comprehensive single-molecule resolution discovery of RNA modification sites in the human transcriptome | Hyeonseo Hwang | | 2025-10-16 (THU) |
| P08 | Transcriptional Regulatory Effect of an Ion Transporter on the Defense-Growth Trade-Off in Arabidopsis thaliana | Dongseok Oh | | 2025-10-16 (THU) |
| P09 | Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer | Woosub Kim | | 2025-10-16 (THU) |
| P10 | Structure-Guided Motif Densification Improves Protein Language Models | Min Su Yoon | | 2025-10-16 (THU) |
| P11 | SE(3) Flow-Matching Framework for Nucleic-Acid–Conditioned Protein Binder Design | Park Jeong Hoon | | 2025-10-16 (THU) |
| P12 | Optimized GPU Kernels for Training Large-Parameter Biomolecular Structure Prediction Models | Sanggeun Park | | 2025-10-16 (THU) |
| P13 | Structural basis of production differences in naringenin α-glycosides catalyzed by amylosucrases | Chang-young Lee | | 2025-10-16 (THU) |
| P14 | Clustering Proteomes and Curating References at Scale with MMseqs2-ProteomeCluster | Gyuri Kim | | 2025-10-16 (THU) |
| P15 | ScFFold: Conditional Flow Matching for RNA Tertiary Structure Prediction | Howon Lee | | 2025-10-16 (THU) |
| P16 | Metagenome-scale structural homology detection with Foldseek-ProstT5 | Mihaila Victor Matei | | 2025-10-16 (THU) |
| P17 | High-performance prediction of riboswitch–ligand interactions with LLM-guided active learning | Mun Sofia | | 2025-10-16 (THU) |
| P18 | Learning Antibody-Specific Epitopes with Domain-Specialized Language Model Embeddings | Yujeong Oh | | 2025-10-16 (THU) |
| P19 | Predicting binding affinity between transcription factors and ligands using a graph-based model | Sung Haechan | | 2025-10-16 (THU) |
| P20 | Exploring the Direct Interaction of Epitalon with Human Telomerase Reverse Transcriptase via Molecular Modeling | Sanghwa Yoon | | 2025-10-16 (THU) |
| P21 | ParalinearDesign: Expanding the mRNA Design Space through Near-Pareto-Optimal Sampling with Tunable Structural Constraints | Jisu Lim | | 2025-10-16 (THU) |
| P22 | Profiling RNA-protein interactome using proximity labeling and nanopore sequencing | Jayoung Ku | | 2025-10-16 (THU) |
| P23 | Statistical sequence coevolution analysis of Intrinsically Disordered Proteins and Regions for binding functionalities | Joongyu Heo | | 2025-10-16 (THU) |
| P24 | GARFold: Massively Parallel GPU-Accelerated RNA Secondary Structure Prediction | Hanju Lee | | 2025-10-16 (THU) |
| Q. Single Cell Sequencing |
| Q01 | Cell-type specific bioinformatics analysis of Ets1 activity and their relevance in systemic lupus erythematosus (SLE) | Jungyoon Kim | | 2025-10-16 (THU) |
| Q02 | Analysis of molecular characteristics linked with P301S tauopathy in the Locus Coeruleus by single-cell and single-nucleus transcriptomic profiling | Bawool Lee | | 2025-10-16 (THU) |
| Q03 | Deciphering gut-to-brain α-synuclein propagation via PRV-based single-cell tracing | Muhammad Junaid | | 2025-10-16 (THU) |
| Q04 | Persistent Immune Imbalance in Post-Acute Sequelae of SARS-CoV-2: Neutrophil-Driven Pathology and Therapeutic Strategies from a P. roborovskii Hamster Model | Suhee Hwang | | 2025-10-16 (THU) |
| Q05 | Immune dysregulation and aberrant B cell responses drive age-dependent severity in SFTSV infection | Dongbin Park | | 2025-10-16 (THU) |
| Q06 | A single-cell RNA-seq dataset of peripheral blood cells in long COVID patients on herbal therapy | Karolina Prazanowska | | 2025-10-16 (THU) |
| Q07 | Interpretable tumor risk stratification via surrogate decision tree analysis of machine learning models: Case study on biliary tract cancer | 박한얼 | | 2025-10-16 (THU) |
| Q08 | Single-nucleus multiome profiling of advanced colorectal polyps suggests putative precancerous epithelial subsets | Yunju Choi | | 2025-10-16 (THU) |
| Q09 | Machine learning–based Treg signature predicts clinical outcomes and immune landscape in ovarian cancer | Hyunmin Woo | | 2025-10-16 (THU) |
| Q10 | Fixative-eXchange (FX)-seq: a platform for transcriptomics analysis of PFA-Fixed and FFPE Samples | Park, Han-Eol | | 2025-10-16 (THU) |
| Q11 | Spatially resolved single-nucleus transcriptomic profiling reveals regional and cellular vulnerability in Parkinson’s disease midbrain | Hwisoo Choi | | 2025-10-16 (THU) |
| Q12 | CluVar: Clustering of variants using Autoencoder for inferring the phylogeny of cancer subclones in single cell RNA sequencing data | Chae won Kim | | 2025-10-16 (THU) |
| Q13 | Identification of cancer-restraining fibroblasts in colorectal cancer | Umair Jan | | 2025-10-16 (THU) |
| Q14 | Somatic Variant Calling in snRNA-seq Metacells Reveals Clonal Phylogeny | Junseong Bae | | 2025-10-16 (THU) |
| Q15 | Characterization of cardiac fibrosis and identification of potential therapeutic targets through a large-scale single-cell atlas | Jiyeon Park | | 2025-10-16 (THU) |
| Q16 | Single-Nucleus Chromatin Accessibility Profiling Reveals Distinct Epigenetic Landscapes and Transcription Factor Regulation Across Thyroid Cancer Subtypes | Hoebin Chung | | 2025-10-16 (THU) |
| Q17 | Single-Cell Transcriptomics Reveals Divergent Interferon Programs in Anti-TNFα Responders and Non-Responders | Euijeong Sung | | 2025-10-16 (THU) |
| Q18 | Integrative transcriptome profiling and machine learning analysis reveal systemic immune signature of Bojungikki-tang with PD-L1 blockade in non–small cell lung cancer | sang yun kim | | 2025-10-16 (THU) |
| Q19 | Clinical transcriptomics-guided development of mRNA-LNP for immunotherapy in sepsis-induced ARDS | Jaehyun Park | | 2025-10-16 (THU) |
| Q20 | stLENS identifies unbiased complex spatial patterns in spatial transcriptomics data | Hyeon-Min Kim | | 2025-10-16 (THU) |
| Q21 | Dysregulation of secretory IgA underlies poor prognosis in Fusobacterium-infected colorectal cancer | Ilseok Choi | | 2025-10-16 (THU) |
| Q22 | Unraveling shared and unique dysregulated transcriptomic meta-programs in synucleinopathies and Alzheimer’s disease | Baekgyu Choi | | 2025-10-16 (THU) |
| R. Biological Networks & Integrative Analysis |
| R01 | Molecular Insights into Jub’s Role in Sarcopenia and Nutritional Interventions | YOUNGJI HAN | | 2025-10-16 (THU) |
| R02 | End-to-End Framework for Condition-Specific Gene Regulatory Network Inference via Multi-View Attention from Single-Cell Multi-Omics | Subin Lee | | 2025-10-16 (THU) |
| R03 | Comparing pathogenic signatures of inflammatory bowel disease with enterotype-specific microbial network changes | Yeram Im | | 2025-10-16 (THU) |
| R04 | LoGo-BERT: Transformer-Based Integration of Local and Global Features for Scalable Protein–Protein Interaction Prediction | Hae Been Lee | | 2025-10-16 (THU) |
| R05 | Controllability of gene regulatory network in zebrafish embryogenesis | kanghee cho | | 2025-10-16 (THU) |
| R06 | Cell-type-specific network inference leveraging single cell foundation models and graph neural networks | Yurim Jung | | 2025-10-16 (THU) |
| R07 | Decoding the 3D Gene Regulatory Network Driving Oncogenic MAZ Activation | Seongwoo Kim | | 2025-10-16 (THU) |
| R08 | Dissecting the unique and shared roles of MAZ and CTCF in organizing genome-speckle interactions | SangHyun Lee | | 2025-10-16 (THU) |
| S. Multimodality modeling |
| S01 | SPAM : Spatial transcriptomics Prediction with self-supervised Alignment of Multi-modalities | Jaeyun Park | | 2025-10-16 (THU) |
| S02 | Predicting substrate specificity of acyltransferase domains in polyketide synthases using machine learning | Joon Young Kwon | | 2025-10-16 (THU) |
| T. Pharmacogenomics |
| T01 | Pharmacogenomic characterization of 14,490 Korea individuals based on the Korea Biobank Array v2.0 | Sinwoo Park | | 2025-10-16 (THU) |
| U. Systems Biology |
| U01 | From Mechanism to Medicine: Deciphering Transcriptomic Landscapes of Muscle Atrophy for Therapeutic Discovery and Resource Building | Ahyoung Choi | | 2025-10-16 (THU) |
| U02 | TENET+: a tool for reconstructing gene networks by integrating single cell expression and chromatin accessibility data | hyeonkyu kim | | 2025-10-16 (THU) |
| U03 | Baseline transcriptomic predictors of cognitive trajectories in Parkinson’s disease | Kyuwon Seo | | 2025-10-16 (THU) |
